Basic tools for bioinformatics
MedTerms Dictionary
SRS
NCBI ENTREZ
BLAST
FASTA
CLUSTALW
TOPS
Biology Workbench
Bioperl
WebLogo
ProteinProspector
GPMDB
Bioinfo3D
BioInfo sites
Journals with bioinformatic content
Bioinformatics
BMC Bioinformatics
BMC Genomics
Journal of Bioinformatics and Computational Biology
Applied Bioinformatics
Briefings in Bioinformatics and Computational Biology
Public Library of Science Computational Biology
ScienceWORLD Bioinformatics
Theoretical Biology and Medical Modelling
Genome Biology
Source Code for Biology and Medicine
Links to materials and resources
ARTICLES
Biologia in Silico - Vesmir 2005
BOOKS
Bioinformatics - books
DATA
Input sequences for IV105
PDB.fa 4 MB
PDB-ss.fa 4 MB
PDB.go 51 MB gunzipped
ATH1.fa 14 MB
ATH1.go 15 MB gunzipped
nr60-40.fa part 1 100 MB
nr60-40.fa part 2 100 MB
nr60-40.fa part 3 100 MB
gene_association.goa_sptr.gz 400MB (30MB gunzipped)
sptr/go-tree 120 MB (10 MB gunzipped)
LECTURES, COURSES AND SLIDESHOWS
Bioinformatics I (IV107) lecture notes (in Slovak)
S* Lecture Videos and Slides
C9080 Bioinformatics (Prof. Jiri Damborsky PrF)
C7920 Structure and Function of Proteins (Doc. Bretislav Brzobohaty PrF)
CS/BIO271 Introduction to Bioinformatics (Dr. Dan Krane)
CS/BIO271 Algorithms for Bioinformatics (Dr. Dan Krane)
CS262 Computational Genomics (Dr. Serafim Batzoglou)
Molecular modelling and biocomputing (Dr. Petr Mejzlik FI)
Computational Molecular Biology at Stanford University
Canadian Bioinformatics Workshop
Canadian Bioinformatics Workshop
Bioinformatics Workshop Materials
Introduction to Proteomics
Cell and DNA Techniques
Biomolecular Modelling und Bioinformatik fur Chemiker
DOE Primer on Molecular Genetics
BIOBOOK
Stryer: Biochemistry
Gilbert: Developmental Biology
NCBI Primer
Power Point presentation on sequence similarity
Power Point presentation on Perl and Bioperl for biologists
Connexions: Proteins and their functions
Myosin motors
Kinesins and Dyneins
OppA peptide binding protein
R14 virus
Protein folding diseases
Protein folding diseases 2
SCOP root
CATH
Collagen
Acetylcholine
The Virtual Cell
Jim Kent: Evolution in Action
About Bioinformatics
2can Resources on Bioinformatics
Introduction to Bioinformatics (D.Wishart)
Advanced Topics in Bioinformatics (D.Wishart)
Introduction to Computational Molecular Biology - source code
Sequence-Function Relationships (S.M.Brown)
Proteomics (J.Bag)
Aminoacids and Proteins (J.Kyrk)
OTHER USEFUL LINKS
EXPASY
DIP
MINT
COG
TESS
Genome Atlas
PubMatrix
PRIME
Ariadne Genomics
R packages for microarrays
DNA Computing
DNA Computing on CNN
DNA Computing 2005
Microarray analysis: the next revolution in molecular biology
PDB Format Guide
Atlas of Macromolecules for Protein Explorer
Wellcome Trust Human Genome Page
Nature Human Genome Page
Atelier Bioinformatique
EMBER Bioinformatics Webcourse
Univ. of Manchaster Resources
http://www.pasteur.fr/recherche/unites/neubiomol/secstrpr.html
Bioperl Chapter
Genbank record for opsin
EBI ArrayExpress
Nanogen DNA Chips
XeoChips
PCR Movie
PCR picture
Bioinformatic links at Kennedy Krieger Institute
Gene Identification Course (Shoop)
Gene Identification Programs
Experimental Approaches in Mass Spectrometry of Proteins
Mass Spectrometry Glossary
Proteomics Spectrometry Glossary
Mass Spectra Interpretation
MS Research Lab Example
Amino Acid Hangman Game
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