Publications
Here I'm listing my most important publications in the past 5 years. The complete list can be found here.
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening
Maria Virginia Sabando, Pavol Ulbrich, Matias Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Lujan Ganuza, Barbora Kozlikova
Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations
Kristina Zakopcanova, Marko Rehacek, Jozef Batrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlikova
DockVis: Visual Analysis of Molecular Docking Trajectories
Katarina Furmanova, Ondrej Vavra, Barbora Kozlikova, Jiri Damborsky, Vojtech Vonasek, David Bednar, Jan Byska
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes
Katarina Furmanova, Adam Jurcik, Barbora Kozlikova, Helwig Hauser, Jan Byska
PINGU: Principles of Interactive Navigation for Geospatial Understanding
Zoltan Oremus, Kahin Akram Hassan, Jiri Chmelik, Michaela Knazkova, Jan Byska, Renata Georgia Raidou, Barbora Kozlikova
HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models
David Kouril, Tobias Isenberg, Barbora Kozlikova, Miriah Meyer, Eduard M. Groelller, Ivan Viola
Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization
Jan Byska, Thomas Trautner, Sergio Manuel Marques, Jiri Damborsky, Barbora Kozlikova, Manuela Waldner
The Moving Target of Visualization Software for an Ever More Complex World
Guido Reina, Hank Childs, Kresimir Matkovic, Katja Buehler, Manuela Waldner, David Pugmire, Barbora Kozlikova, Timo Ropinski, Patric Ljung, Takayuki Itoh, Eduard Groeller, Michael Krone
Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments
David Kouril, Ladislav Cmolik, Barbora Kozlikova, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur Olson, Eduard M. Groelller, Ivan Viola
Multiscale Molecular Visualization
Haichao Miao, Tobias Klein, David Kouril, Peter Mindek, Karsten Schatz, Eduard M. Groeller, Barbora Kozlikova, Tobias Isenberg, Ivan Viola
Visualization of Large Molecular Trajectories
David Duran, Pedro Hermosilla, Timo Ropinski, Barbora Kozlikova, Alvar Vinacua, Pere-Pau Vazquez
CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories
Adam Jurcik, David Bednar, Jan Byska, Sergio Manuel Marques, Katarina Furmanova, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonin Pavelka, Martin Manak, Jiri Damborsky, Barbora Kozlikova
COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions
Katarina Furmanova, Jan Byska, Eduard M. Groeller, Ivan Viola, Jan J. Palecek, Barbora Kozlikova
Instant Construction and Visualization of Crowded Biological Environments
Tobias Klein, Ludovic Autin, Barbora Kozlikova, David S. Goodsell, Arthur Olson, M. Eduard Groeller, Ivan Viola
Comparative Visualization of Protein Secondary Structures
Lucia Kocincova, Miroslava Jaresova, Jan Byska, Julius Parulek, Helwig Hauser, Barbora Kozlikova
Interactive Exploration of Ligand Transportation through Protein Tunnels
Katarina Furmanova, Miroslava Jaresova, Jan Byska, Adam Jurcik, Julius Parulek, Helwig Hauser, Barbora Kozlikova
Visualization of Biomolecular Structures: State of the Art Revisited
Barbora Kozlikova, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, HansâChristian Hege
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
Jan Byska, Mathieu Le Muzic, M Eduard Groeller, Ivan Viola, Barbora Kozlikova